or filter by:
Kidney Safety Biomarkers
Acute Kidney Injury (AKI) Biomarker Plandownload a pdf version
Acute Kidney Injury (AKI) Biomarker Plan
The aim of the safety biomarker program at Pacific Biomarkers (PacBio) is to assess the occurrence of organ injury due to specific toxic effects of drugs in development that could prevent their approval. This will avert injury to patients that would have been treated by drugs whose toxicity would fail to be detected by current methods and will further reduce healthcare costs by early recognition that a drug is not safe as the result of drug-induced toxic effects. The latter is expected to speed up drug development by several years. Current costs related to the development of a drug from discovery to the final approval are estimated to be about $1 billion. Drug-induced toxicity accounts for 30% of all drug failures prior to reaching the market, and the sooner this toxicity is discovered, the sooner further costly studies could be stopped. The PacBio safety biomarker program has the potential to diagnose toxic drug effects that currently are being missed in clinical trials.
A strategic goal for PacBio is to provide pharmaceutical and biotech companies with services for testing robust novel biomarkers that have undergone thorough analytical validation and clinical qualification to diagnose early organ injury. This work is taking place in response to FDA-initiated recommendations for streamlining and improving drug development outcomes as outlined in the Critical Path Initiative through guidance from the Predictive Safety Testing Consortium (PSTC) and the Health and Environment Sciences Institute (HESI). During the past 20 years, PacBio has acquired extensive experience in biomarker standardization as a member of the Cholesterol Reference Method Laboratory Network and work in other areas of diagnostic test improvement. The anticipated qualification of organ injury biomarkers will also demand development of stringent standardization procedures (e.g., consistency in test accuracy, precision, and sensitivity).
The first initiative in PacBio’s safety biomarker program is to target biomarkers with the clinical, preanalytical and analytical qualities that current literature and experimental evidence indicate have the greatest potential for early detection of treatment (drug)-induced acute kidney injury (AKI). This is being followed by a similar evaluation of markers associated with treatment-induced injury for liver and heart. PacBio is currently collaborating with the research and development leaders in this field to characterize the analytical and clinical performance of these novel renal biomarkers.
PacBio has already characterized the analytical performance of a range of AKI biomarkers (see Table 1). PacBio suggests utilizing the biomarkers that have been recommended by the various consortia and key opinion leaders in the field, are analytically valid and appear to be stable until measured. Biomarkers meeting these criteria are marked by an asterisk (Table 1) and cover both specific and global renal injury.
The PacBio approach to analyzing AKI biomarkers begins with validate assays for each biomarker using rigorous protocols for singlicate determination, with the expectation of generating the most robust data possible. During this process, PacBio has often been required to modify existing assay methods. Thus, the best possible analytical performance, i.e., superior precision, accuracy, sensitivity and specificity, has been the goal. Quality analytical performance has been sought to ensure that during the current period of the clinical qualification of these biomarkers, the data are not tainted by poor analytical and preanalytical performance. This approach incorporates clinical considerations while establishing a consensus for the best AKI biomarkers. The eventual consensus on five to seven biomarkers will lead to their use with unreserved confidence.
Thorough evaluation and years of experience utilizing the validated AKI biomarker assays has provided PacBio with the insight to pinpoint which AKI biomarkers will prove best for monitoring kidney injury. With this knowledge, PacBio is now moving forward with investigations of multiplex procedures for AKI biomarkers. Multiplexing will reduce cost and improve testing turnaround time. While the analytical performance may deteriorate significantly during multiplexing for some biomarkers, PacBio has given high priority to establishing excellent performance for the individual biomarkers before attempting to multiplex them. This provides assay performance expectations for use in the multiplex assay evaluation.
Issues surrounding the best methods of collecting and storing urine used for detection of AKI in human subjects are being address at Pacific Biomarkers. Our observations indicate that some of the candidate biomarkers are susceptible to loss associated with non-specific binding from the small aliquots of urine prepared for storage. This effect could reasonably be expected given the relatively low protein concentration in most urine samples, and it is reflected in the variability of the loss of biomarker from one urine collection to another. Different urine compositions, even from the same subject, have variable protein concentrations; however, when high enough, the non-specific loss is less problematic. Of course, which urine collections will be affected cannot be predicted, but fortunately, the effect is easily overcome by addition of a small volume of a ‘carrier’ protein-containing preservative. The resulting dilution is accounted for by normalization of biomarker level using urine creatinine.
PacBio is well positioned to undertake support for biomarker candidates for early AKI detection because: :
- PacBio has a long-standing history of employing rigorous validation standards for esoteric biomarkers, and this expertise and commitment has been used to initiate, develop, and validate renal injury biomarker assays.
- PacBio has meticulously evaluated the analytical and preanalytical performances of all of the most promising biomarkers of AKI. This allows pharmaceutical and biotech companies involved in development of novel therapeutics to incorporate these biomarkers in their clinical trials with a clear set of performance expectations.
- PacBio has extensive expertise in dealing with preanalytical issues associated with biomarker testing, and has researched the effects of the usual handling procedures on urinary AKI biomarker recovery.
- PacBio provides general and study-specific recommendations for specimen collection and storage that are reasonable and that are based on in-house biomarker recovery data.
- PacBio is well suited to complete the transfer of the most clinically efficacious of these biomarker assays to multiplexed methods.
|Name||Type of Injury and Location||Method|
|Markers of Specific Renal Tissue Injury|
|Kidney Injury Molecule 1 (KIM-1)*1-3||Proximal tubule||EIA|
|Neutrophil Gelatinase-associated Lipocalin (NGAL)*2-7||Proximal tubular epithelium and lysosomal enzyme release||EIA|
|N-Acetyl-β-D Glucosaminadase (NAG)||Proximal tubule||Enzyme Activity|
|Interleukin 18 (IL-18)7||Apoptotic processes in the tubule epithelium||ECLIA|
|Markers of Global Renal Function|
|Cystatin C*2||Glomerular; in urine specific for tubule damage||Immunotubidimetric|
|Albumin||Glomerular and tubular epithelium||Immunotubidimetric|
|Total protein||Glomerular and tubular function||Turbidimetric|
|β2-microglobulin||Glomerular and tubular function||Immunotubidimetric|
|Liver type Fatty Acid Binding Protein (L-FABP)7||Ischemic signal in tubular epithelium||EIA|
|Osteoactivin||Proximal tubular epithelial injury||EIA|
|Retinol-binding Protein||Proximal tubular epithelial injury||EIA|
|α-Glutathione S-Transferase (α-GST)10||Proximal tubular epithelial injury||EIA|
|γ-Glutamyl Transferase (γ-GT)10||Tubular epithelial injury||Enzyme Activity|
|π-Glutathione S-Transferase (π-GST)||Distal tubular epithelial injury||EIA|
|Type IV Collagen||Glomerular injury||EIA|
*PBI recommends the use of these key AKI biomarkers for the detection of specific and global renal injury.
EIA – Enzyme-Linked Immunosorbent Assay (ELISA)
ECLIA – Electrochemiluminescence Immunoassay
- Sistare, Devarajan P, Bonventre J, Dieterle F, Star R, Warnock D, Blank M. Assessing and Predicting Kidney Safety. In: Accelerating the Development of Biomarkers for Drug Safety: Workshop Summary. Instutute of Medicine (IOM), ed. 2009. The National Academies Press, Washington, DC.
- Goldstein SL, Devarajan P. Progression from acute kidney injury to chronic kidney disease: a pediatric perspective. Adv Chronic Kidney Dis. 2008;15:278-283.
- Goodsaid F, Frueh F, Mattes W. The Predictive Safety Testing Consortium: A synthesis of the goals, challenges and accomplishments of the Critical Path. Drug Discovery Today: Technologies. 2007;4:47-50.
- ILSI Health and Environmental Sciences Institute Mid Year Committee Status Reports. http://www.hesiglobal.org/i4a/ pages/index. cfm?pageid=3462 . 2009.
- Zhang J, Brown RP, Shaw M, Vaidya VS, Zhou Y, Espandiari P, Sadrieh N, Stratmeyer M, Keenan J, Kilty CG, Bonventre JV, Goering PL. Immunolocalization of Kim-1, RPA-1, and RPA-2 in kidney of gentamicin-, mercury-, or chromium-treated rats: relationship to renal distributions of iNOS and nitrotyrosine. Toxicol Pathol. 2008;36:397-409.
- Campbell JA, Corrigall AV, Guy A, Kirsch RE. Immunohistologic localization of alpha, mu, and pi class glutathione S-transferases in human tissues. Cancer. 1991;67:1608-1613.
- Walshe CM, Odejayi F, Ng S, Marsh B. Urinary glutathione S-transferase as an early marker for renal dysfunction in patients admitted to intensive care with sepsis. Crit Care Resusc. 2009;11:204-209.
- Goldberg ME, Cantillo J, Gratz I, Deal E, Vekeman D, McDougall R, Afshar M, Zafeiridis A, Larijani G. Dose of compound A, not sevofl urane, determines changes in the biochemical markers of renal injury in healthy volunteers. Anesth Analg. 1999;88:437-445.
- Bachorzewska-Gajewska H, Malyszko J, Sitniewska E, Malyszko JS, Dobrzycki S. Neutrophil gelatinase-associated lipocalin (NGAL) correlations with cystatin C, serum creatinine and eGFR in patients with normal serum creatinine undergoing coronary angiography. Nephrol Dial Transplant. 2007;22:295- 296.
- Haase M, Devarajan P, Haase-Fielitz A, Bellomo R, Cruz DN, Wagener G, Krawczeski CD, Koyner JL, Murray P, Zappitelli M, Goldstein SL, Makris K, Ronco C, Martensson J, Martling CR, Venge P, Siew E, Ware LB, Ikizler TA, Mertens PR. The outcome of neutrophil gelatinase-associated lipocalin-positive subclinical acute kidney injury: a multicenter pooled analysis of prospective studies. J Am Coll Cardiol. 2011; 57:1752-1761
- Pelsers MM. Fatty acid-binding protein as marker for renal injury. Scand J Clin Lab Invest Suppl. 2008;241:73-77.
- Sasaki H, Kamijo-Ikemori A, Sugaya T, Yamashita K, Yokoyama T, Koike J, Sato T, Yasuda T, Kimura K. Urinary fatty acids and liver-type fatty acid binding protein in diabetic nephropathy. Nephron Clin Pract. 2009;112:c148-c156.
1. V. S. Vaidya, V. Ramirez, T. Ichimura, N. A. Bobadilla, and J. V Bonventre, “Urinary kidney injury molecule-1: a sensitive quantitative biomarker for early detection of kidney tubular injury,” Am. J. Physiol. Renal Physiol., vol. 290, pp. 517–529, 2006.
2. V. S. Vaidya, S. S. Waikar, M. A. Ferguson, F. B. Collings, C. Gioules, G. Bradwin, R. Matsouaka, A. Rebecca, G. C. Curhan, and J. V Bonventre, “Urinary Biomarkers for Sensitive and Specifi c Detection of Acute Kindey Injury in Humans,” Clin Transl Sci., vol. 1, no. 3, pp. 200–208, 2008.
3. J. Malyszko, “Biomarkers of Acute Kidney Injury in Different Clinical Settings : A Time to Change the Paradigm?,” Kidney Blood Press. Res., vol. 33, pp. 368–382, 2010.
4. H. Bachorzewska-Gajewska, J. Malyszko, E. Sitniewska, J. S. Malyszko, and S. Dobrzycki, “Neutrophil gelatinase-associated lipocalin (NGAL) correlations with cystatin C, serum creatinine and eGFR in patients with normal serum creatinine undergoing coronary angiography.,” Nephrol. Dial. Transplant, vol. 22, no. 1, pp. 295–6, Jan. 2007.
5. M. Haase, P. Devarajan, A. Haase-Fielitz, R. Bellomo, D. N. Cruz, G. Wagener, C. D. Krawczeski, J. L. Koyner, P. Murray, M. Zappitelli, S. L. Goldstein, K. Makris, C. Ronco, J. Martensson, C.-R. Martling, P. Venge, E. Siew, L. B. Ware, T. A. Ikizler, and P. R. Mertens, “The outcome of neutrophil gelatinase-associated lipocalin-positive subclinical acute kidney injury: a multicenter pooled analysis of prospective studies.,” J. Am. Coll. Cardiol., vol. 57, no. 17, pp. 1752–61, Apr. 2011.
6. J. Mishra, Q. Ma, A. Prada, M. Mitsnefes, K. Zahedi, J. Yang, J. Barasch, and P. Devarajan, “Identifi cation of Neutrophil Gelatinase-Associated Lipocalin as a Novel Early Urinary Biomarker for Ischemic Renal Injury,” J. Am. Soc. Nephrol., vol. 14, no. 10, pp. 2534–2543, Oct. 2003.
7. K. Doi, K. Negishi, T. Ishizu, D. Katagiri, T. Fujita, T. Matsubara, N. Yahagi, T. Sugaya, and E. Noiri, “Evaluation of new acute kidney injury biomarkers in a mixed intensive care unit.,” Crit. Care Med., vol. 39, no. 11, pp. 2464–9, Nov. 2011.
8. P. Vinken, S. Starckx, E. Barale-Thomas, A. Looszova, M. Sonee, N. Goeminne, L. Versmissen, K. Buyens, and A. Lampo, “Tissue Kim-1 and urinary clusterin as early indicators of cisplatin-induced acute kidney injury in rats.,” Toxicol. Pathol., vol. 40, no. 7, pp. 1049–62, Oct. 2012.
9. J. Sodek, B. Ganss, and M. D. Mckee, “Osteopontin,” Crit. Rev. Oral Biol. Med., vol. 11, no. 3, pp. 297–303, 2000.
10. G. Targher, J. Kendrick, G. Smits, and M. Chonchol, “Relationship between serum gamma-glutamyltransferase and chronic kidney disease in the United States adult population. Findings from the National Health and Nutrition Examination Survey 2001-2006.,” Nutr. Metab. Cardiovasc. Dis., vol. 20, no. 8, pp. 583–90, Oct. 2010.